Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015910295.1_cds_XP_016460354.1_53784
CDS Infomation

[gene=LOC107783843] [db_xref=GeneID:107783843] [protein=mechanosensitive ion channel protein 2, chloroplastic-like isoform X3] [protein_id=XP_016460354.1] [location=join(42059..42136,42266..42325,43309..43364,43755..43878,43973..44070,44160..44273,44487..44547,45067..45216,45434..45544,45751..45918,46020..46133,46908..46964,47454..48281)] [gbkey=CDS]
Sequence

ATGGCAGCTGCTGTCTCATTGCTGCTGCCCCGCGAACTGGGAATCCACGGGAAATGTGGA
TTCACCTGCCAGCCTAAGGGCACAATGAGCAGGATCCAGACAGATTCTTGCAGCAAATTT
CTGTCATCACATTCTTCGCCAGGTGGAGGATATGAGAGTCAATTTCTGAAAACAGCAGCA
CTAATATGGAAAAGGTCATTAAATATTATACATGGGAGCCCCCTTGTGCTTCAGCTGGTG
CCGGCCATTGGAGTTATTGTTTTAGCCGCATGGGGTCTCATTCCATTGATGAGTTTTGGC
AGAAAATTTTTCTTTCATGAAAGTGGTAGTAATTGGAAACAAAGCGGCTTGCATCATGTT
GCAGATTCCTATCTTAAACCTGTGCTTTTATGGACCGGAGCAATACTTATATGCAGAGCA
GTGGATCCACTGATTTTACCTTCAGCTGCAAGCCAGGCAGTCAAGCAAAGATTTACTACT
TTTATACGATCATTATCGACAGTGATGGCACTTGCCTACTGTTTATCTAGCTTGATTCAG
CAAACACAAAAATTCCTTATGGAGACAAAAGACCCCTCTGATGCAAGAAATATGGGATTC
GAATTTGCAGGGAAAGCTGTATATACTGCAGTGTGGGTTGCAGCTGTTTCATTGTTCATG
GAACTGCTTGGTTTTTCTACACAGAAGTGGTTGACAGCTGGGGGTCTTGGGACAGTATTG
CTTACTCTTGCTGGTCGTGAGATACTTACGAACTTCCTCTCAAGCATAATGATCCATGCA
ACAAGGCCCTTTGTTCTAAATGACTGGATACAGACAAAGATACAGGGCTATGACGTCTCT
GGTACAGTGGAGCACGTAGGTTGGTGGTCACCAACAGTCATAAGAGGTGATGACCGTGAA
GCCATTCATATACCAAATCACAAATTTTCAGTGAATATCGTCAGGAATCTTAGCCAGAAG
ACTCATTGGAGGATCAAGACTCACCTTGCCATCAGCCACTTGGATGTGAATAAGATCAAT
AACATTGTTGCGGATATGCGGAAGGTTTTGGCGAAAAATCCTCAAATAGAACAGCAACGA
TTGCATAGGCGAGTTTTTCTGGATAATGTTGATCCAGAGAATCAGGCTCTTATGATCATG
ATTTCTTGCTTTGTGAAGACTTCTTATTTTGAAGAGTACTCCCGAGTGAAGGAAGTTATA
TTGCTGGATCTGCTTCGAGTAATCAGCCATCATCGTGCTCGGCTTGCTACACCTCTTCGT
ACTGTGCAGAAAACATATCGCGAACCTGATGCGGATGATGTACCATTTGCTGATTCCATT
TTCTCTCGTGACCGTCCTAATCGCCCATTCTTCCTTATTGAGCCTTCTTATAGGATCAAT
AATGACGATAAAACTAAGGTGTCTGCCCGTTCAGTACAACCTGATGAAGAAAAAGATGGA
AAGGCTGAAGCACCAAGTACATCACAGGCTGCTGATGATACAAATGGTTTGCTATCAAAG
CCTACTGAGAAAGAAGTTGTTAAGGTCTCGTCAGCATCAAATGCTAATGTCGATTTAAAA
GTAGCAACTTTGTCTTCAGATGGAAAAACACCAAAACAAGGATCGATTAGTCCAGTTAAA
AGCAACTCTGAGAAAAACCAAGTTGCTTCAGCAACTGGAGAGGCACCAGGGTTGACATCA
GATATCAACATTGAGAAGACAGATGTGGCATCTGCTGCTTCACAGGCACAACAAGATGCC
GAAAGACCAATTTCACCACCTTCTGTGGGAAGGCCCATGTTAGAAGATAACATTGTTCTT
GGTGTTGCACTAGAAGGGTCAAAATTAACACTTCCAATTGAGGAAGAAGCGACTCCACCC
TCTCCCTCTCCCTCTCCAACATTTTCCGACTCAGAATCAAAGGAGTTGGCTGCCTGCCGG
AATGGGAATAGCTCAACCAGCTCAAATAAAGATAAGATGGATGATCAGATGGCTGAAGCT
CCAAGTGCACCAAGCGTCCAAAAAGAATGCGAAAGGTGA

Peptide Sequence

PEP ID

XP_016460354.1
PEP Infomation

PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Nicotiana tabacum]
Sequence

MAAAVSLLLPRELGIHGKCGFTCQPKGTMSRIQTDSCSKFLSSHSSPGGGYESQFLKTAA
LIWKRSLNIIHGSPLVLQLVPAIGVIVLAAWGLIPLMSFGRKFFFHESGSNWKQSGLHHV
ADSYLKPVLLWTGAILICRAVDPLILPSAASQAVKQRFTTFIRSLSTVMALAYCLSSLIQ
QTQKFLMETKDPSDARNMGFEFAGKAVYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVL
LTLAGREILTNFLSSIMIHATRPFVLNDWIQTKIQGYDVSGTVEHVGWWSPTVIRGDDRE
AIHIPNHKFSVNIVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQIEQQR
LHRRVFLDNVDPENQALMIMISCFVKTSYFEEYSRVKEVILLDLLRVISHHRARLATPLR
TVQKTYREPDADDVPFADSIFSRDRPNRPFFLIEPSYRINNDDKTKVSARSVQPDEEKDG
KAEAPSTSQAADDTNGLLSKPTEKEVVKVSSASNANVDLKVATLSSDGKTPKQGSISPVK
SNSEKNQVASATGEAPGLTSDINIEKTDVASAASQAQQDAERPISPPSVGRPMLEDNIVL
GVALEGSKLTLPIEEEATPPSPSPSPTFSDSESKELAACRNGNSSTSSNKDKMDDQMAEA
PSAPSVQKECER

Transcript Sequence

Gene sequence data has not been registered.